Ramachandran plot

A Ramachandran plot can be used in two somewhat different ways.

The Ramachandran plots show that 64.6% of all residues were in a favored region.

Also, a Ramachandran plot can be found here.

No residues in the final model deviate significantly from the allowed areas of the Ramachandran plot.

All non-glycine,angles lie in allowed regions of the Ramachandran plot.

Famous for the creation of the Ramachandran plot.

Ramachandran plot - validate the torsion angles of a protein chain.

These preferred angles are an estimate of the most clustered data of the Ramachandran plot.

Within each type, turns may be further classified by their backbone dihedral angles (see Ramachandran plot).

One might expect that larger side chains would result in more restrictions and consequently a smaller allowable region in the Ramachandran plot.

Ramachandran plot.

They have a regular geometry, being constrained to specific values of the dihedral angles ψ and φ on the Ramachandran plot.

Ramachandran Plot for destrin:

A Ramachandran plot was constructed for BMP.

Proline is one of the two amino acids that do not follow along with the typical Ramachandran plot, along with glycine.

The Ramachandran Plot of HLA-DM can be seen here here.

The Ramachandran plot shows that the structure of mitochondrial ferritin is mainly alpha helical with a low prevalence of beta sheets.

Link to Ramachandran plot calculated from protein structures determined by X-ray crystallography compared to the original Ramachan.

Because dihedral angle values are circular and 0 is the same as 360 , the edges of the Ramachandran plot "wrap" right-to-left and bottom-to-top.

Possible features to which an energy can be assigned include torsion angles (such as the angles of the Ramachandran plot), solvent exposure or hydrogen bond geometry.

The Ramachandran plot shows that the secondary structure of the CRY1 protein is primarily a right-handed alpha helix with little to no steric overlap.

In biochemistry, a Janin plot is like a Ramachandran plot - a way to visualize dihedral angle distributions in protein structures.

The Φ and Ψ angles of the amino acids in sheets vary considerably in one region of the Ramachandran plot.

Ramachandran plot for the structure of S. faecalis HPr; crosses and squares represent non-glycine and glycine residues, respectively.

While a Ramachandran plot relates the two backbone dihedral angles, a Janin plot relates the first side chain dihedral angle χ-1 against χ-2.